Padraig Gleeson

User projects

The Open Source Brain repository
Developer, Scientific Coordinator, 21 Mar 2011
Cerebellar Golgi Cell - Solinas et al. 2007
Developer, 09 Jun 2011
I&F granule cell model - Rothman & Piasini
Manager, Developer, 23 Feb 2012
Cerebellar Granule Cell - Solinas et al. 2010
Developer, 24 Feb 2012
Cerebellar Granule Cell - Maex De Schutter 1998
Developer, 23 May 2012
Granule Cell - Steuber, Saviane & Berends
Developer, 23 Feb 2012
Purkinje Cell - De Schutter and Bower 1994
Developer, 09 Jun 2011
Granule Cell Layer - Maex and De Schutter 1998
Developer, 09 Jun 2011
Golgi Cell Network - Vervaeke et al 2010
Developer, 09 Jun 2011
L5 Pyramidal Cell - Mainen et al. 1995
Scientific Coordinator, 09 Jun 2011
L5 Pyramidal cell - Rothman et al. 2009
Developer, 09 Jun 2011
Thalamocortical network - Traub et al. 2005
Developer, 09 Jun 2011
CA1 Pyramidal Cell - Migliore et al. 2005
Developer, 09 Jun 2011
Cerebellar Nucleus Neuron - Steuber et al. 2011
Developer, 28 Feb 2012
Striatal Spiny Projection Neuron - Blackwell
Developer, 01 Mar 2012
Izhikevich Spiking Neuron Model
Developer, Scientific Coordinator, 06 Mar 2012
OpenWorm C. elegans network model
Developer, 08 Mar 2012
Cerebellar modelling
Manager, 21 May 2012
Neocortical modelling
Scientific Coordinator, 21 May 2012
Hippocampal modelling
Manager, 21 May 2012
Basal ganglia modelling
Developer, 21 May 2012
Whole brain models
Manager, 22 May 2012
Morris Lecar Model
Developer, 07 Sep 2012
Self Sustained Network Activity - Destexhe 2009
Developer, 16 Oct 2012
Muscle cell model - Boyle & Cohen 2008
Developer, 08 Oct 2012
Celegans Neuromechanical Gait Modulation - Boyle Berri Cohen 2012
Developer, 16 Oct 2012
Simulator Test Data
Developer, 31 Oct 2012
Minimal HH models - Pospischil et al. 2008
Developer, 12 Nov 2012
Drosophila Projection Neuron - Gouwens and Wilson, 2009
Developer, 14 Dec 2012
Nengo - NeuroML interoperability
Scientific Coordinator, 27 Dec 2012
NeuroElectro & SciUnit Showcase
Scientific Coordinator, 05 Jan 2013
NeuroMorpho.org Showcase
Developer, 13 Jan 2013
Connection Set Algebra Showcase
Developer, 13 Feb 2013
Layer 5b Pyramidal cell - Hay et al. 2011
Developer, 17 Feb 2013
Piriform Cortex Pyramidal Neuron
Developer, 22 Mar 2013
Reduced CA3 model - Pinsky and Rinzel 1994
Developer, 26 Mar 2013
Sparsely connected spiking neuron network - Brunel 2000
Developer, 26 Mar 2013
NineML Showcase
Developer, 12 Apr 2013
Brian Showcase
Developer, 12 Apr 2013
MUSIC Showcase
Developer, Scientific Coordinator, 16 Apr 2013
SBML Showcase
Developer, Scientific Coordinator, 03 May 2013
Hindmarsh and Rose 1984
Developer, 14 May 2013
FitzHugh Nagumo - FitzHugh 1969
Scientific Advisor, 15 May 2013
Bluehive Showcase
Developer, Scientific Coordinator, 26 May 2013
Cerebellar Granule cell modelling
Manager, Developer, Scientific Coordinator, 28 May 2013
NIF and NeuroLex Showcase
Developer, Scientific Coordinator, 30 May 2013
CATMAID Showcase
Developer, Scientific Coordinator, 04 Jun 2013
Balanced network with inhibitory plasticity - Vogels et al. 2011
Developer, 24 Jun 2013
Pyloric pacemaker network - Prinz et al. 2003/04
Developer, 05 Jul 2013
L5 Pyramidal Cell Models
Developer, Scientific Coordinator, 08 Jul 2013
Thalamic models
Developer, Scientific Coordinator, 14 Jul 2013
Multicompartmental granule cell - Diwakar et al. 2009
Developer, 15 Jul 2013
Primary Auditory Cortex network
Developer, 04 Sep 2013
Olfactory Bulb Network Model - O'Connor, Angelo and Jacob 2012
Developer, 14 Sep 2013
Computational Neuroscience Ontology Showcase
Developer, 17 Sep 2013
Dentate Gyrus - Santhakumar et al 2005
Developer, 02 Oct 2013
NSG Portal Showcase
Developer, Scientific Coordinator, 02 Oct 2013
Dentate Gyrus network model - Soltesz lab
Developer, Scientific Coordinator, 03 Oct 2013
neuroConstruct Showcase
Developer, Scientific Coordinator, 30 Oct 2013
Model tuning
Developer, Scientific Coordinator, 05 Nov 2013
NEURON Showcase
Developer, Scientific Coordinator, 08 Nov 2013
GPU Based Simulation Showcase
Developer, 13 Dec 2013
FPGA Based Simulations Showcase
Developer, 13 Dec 2013
Blender to NeuroML for C elegans connectome
Developer, 07 Jan 2014
Drosophila 3rd instar larval aCC motoneuron - Gunay et al 2014
Developer, 04 Sep 2015
Synaptic integration in L5 Pyramidal cell - Larkum et al. 2009
Developer, 14 Jan 2014
L5 Pyramidal Neuron - Almog and Korngreen 2014
Developer, 14 Jan 2014
Geppetto Showcase
Developer, 20 Jan 2014
GHK & Nernst examples
Developer, 25 Feb 2014
CA1 Pyramidal Sublayer Microcircuit - Lee et al 2014
Developer, 21 Mar 2014
NMDA spikes in L5 Pyramidal cells - Farinella et al 2014
Developer, 21 Mar 2014
ModelDB Showcase
Scientific Coordinator, 01 May 2014
Network models of V1
Developer, Scientific Coordinator, 05 Jun 2014
Allen Institute & NeuroML
Developer, 17 May 2015
VierlingClaassenEtAl2010
Developer, 17 Oct 2014
3D Olfactory Bulb - Migliore et al. 2014
Developer, 02 Mar 2015
Demo of 3D Cerebellum
Developer, 18 Mar 2015
Granular Layer Network Model - Solinas, Nieus & D'Angelo 2010
Developer, 16 Apr 2015
Laminar organization of motor cortex - Weiler et al 2008
Developer, 28 Apr 2015
Collaborative and Integrative Modeling of Hippocampal Area CA1
Developer, 10 May 2015
CA1 pyramidal cell - Ferguson et al. 2014
Developer, 01 Jun 2015
VERTEX Showcase
Scientific Coordinator, 17 Jun 2015
CA1 PV+ fast firing cell - Ferguson et al. 2013
Developer, 17 Mar 2016
Hodgkin Huxley Tutorial
Developer, 03 Jul 2015
Blue Brain Project Showcase
Developer, 09 Oct 2015
Wang & Buzsaki 1996
Scientific Coordinator, 21 Mar 2016
NetPyNE Showcase
Scientific Coordinator, 16 May 2016
PyNN Showcase
Scientific Coordinator, 09 Jun 2016
M1 Network Model
Developer, 20 Jun 2016
Dentate gyrus granule cell
Developer, 29 Jun 2016
CA3 pyramidal cell
Developer, 30 Jun 2016
Synaptic Integration Demo
Developer, 19 Oct 2016
DG Basket Cell - Norenberg et al. 2010
Developer, 11 Jan 2017
CA1 Network Model - Bezaire et al 2016
Developer, 12 Jun 2017

13 Jun 2017

18:26 Thalamocortical network - Traub et al. 2005 Revision ef58bbc0: Adding colours
17:51 Thalamocortical network - Traub et al. 2005 Revision 7a53de5c: Adding colours
10:29 Thalamocortical network - Traub et al. 2005 Revision a1d74a07: Changing id to match file name for simplicity

26 May 2017

12:31 Thalamocortical network - Traub et al. 2005 Revision 83bbfb31: Removing some tests as jnml_neuron times out as it's testing too much

18 May 2017

09:49 Thalamocortical network - Traub et al. 2005 Revision dc9c0f5a: Update .travis.yml

11 Apr 2017

13:38 Thalamocortical network - Traub et al. 2005 Revision fddd0153: Update .travis.yml
13:17 Thalamocortical network - Traub et al. 2005 Revision 2212367c: Update .travis.yml

20 Mar 2017

16:02 Thalamocortical network - Traub et al. 2005 Revision 70dd6d31: Add test medium files
15:56 Thalamocortical network - Traub et al. 2005 Revision 097bbd4a: Adding medium net

06 Mar 2017

10:02 Thalamocortical network - Traub et al. 2005 Revision 5f41249b: Resize net