Muscle cell model - Boyle & Cohen 2008
C elegans muscle cell model in NeuroML 2¶
This is a NeuroML 2 implementation of the C elegans muscle cell model of Boyle & Cohen, 2008.
To install & run this version, install either jNeuroML (for jnml, as outlined here), or PyNeuroML (for pynml, as outlined here).
Get a local copy of this repository with:
git clone https://github.com/openworm/muscle_model.git
git clone firstname.lastname@example.org:openworm/muscle_model.git # if SSH authentication is set up locally
Go into the directory with the NeuroML 2 version of the model:
Run the example cell (trying to reproduce Figure 2A in Boyle & Cohen, 2008) with:
jnml LEMS_Figure2A.xml # using jNeuroML
pynml LEMS_Figure2A.xml # using PyNeuroML
Run the example cell (trying to reproduce Figure 2B in Boyle & Cohen, 2008) with:
jnml LEMS_Figure2B.xml pynml LEMS_Figure2B.xml
An iPython notebook with examples of how to explore elements of the muscle model is available at Explore.ipynb.
For more details on the current status of this conversion, see issue: https://github.com/openworm/OpenWorm/issues/169